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Sample GSM2612248 Query DataSets for GSM2612248
Status Public on May 12, 2017
Title whole_blood_control_51
Sample type RNA
 
Source name whole_blood_control
Organism Homo sapiens
Characteristics subject group: CNTL; healthy control
anxiety: no
gender: F
age: 59.7
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 153
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.57331435
1557055_s_at 7.762015925
227201_at 5.784650964
231942_at 3.923587765
235497_at 4.303081731
236624_at 4.158936158
237011_at 3.722378133
1555979_at 6.288733393
1555980_a_at 4.691603298
1560477_a_at 5.981300817
1559139_at 3.234371766
202115_s_at 7.828753311
1555650_at 5.138469103
229792_at 6.154669077
224125_at 6.559527579
224501_at 5.533550748
227347_x_at 5.240171703
205483_s_at 9.446852747
212283_at 5.604394477
212285_s_at 6.753391813

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612248_GP2842_57_SS490529_HG-U133_Plus_2_HCHP-228053_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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