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Sample GSM2612186 Query DataSets for GSM2612186
Status Public on May 12, 2017
Title whole_blood_case_59
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: yes
gender: F
age: 51
tissue: whole blood
batch: 1
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 91
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 4.360949391
1557055_s_at 4.281865628
227201_at 4.721880278
231942_at 4.673089544
235497_at 4.402428752
236624_at 4.620447131
237011_at 4.044798235
1555979_at 7.228347774
1555980_a_at 4.733789418
1560477_a_at 7.390423656
1559139_at 3.834928752
202115_s_at 7.178602507
1555650_at 5.197877754
229792_at 4.711170406
224125_at 7.480826456
224501_at 5.958263228
227347_x_at 5.647892726
205483_s_at 7.950074256
212283_at 5.649138588
212285_s_at 6.434891985

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM2612186_GP1531_91A_66_SS124134_HG-U133_Plus_2_HCHP-90338_.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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