|
| Status |
Public on Oct 11, 2017 |
| Title |
3_Z12_d3_Control |
| Sample type |
SRA |
| |
|
| Source name |
cortical organoids_mock_3d
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Human cerebral organoids
infected with: Control
timepoint: 3 days of post infection
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Human cortical organoids were lysed in QIAzol reagents and RNA was extracted following manufacturer’s instructions (the miRNeasy Micro Kit, Qiagen).
the KAPA stranded mRNA-Seq kits (KAPA Biosystems)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
genomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
RNAseq reads were aligned to the hg38 genome assembly using STAR_2.4.0j with default parameters.
Genome_build: hg38
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each Sample
|
| |
|
| Submission date |
Apr 18, 2017 |
| Last update date |
Mar 07, 2023 |
| Contact name |
Bennett Novitch |
| E-mail(s) |
bnovitch@ucla.edu, bnovitch@g.ucla.edu, bnovitch@mednet.ucla.edu
|
| Phone |
3107949339
|
| Organization name |
University of California, Los Angeles
|
| Department |
Department of Neurobiology
|
| Lab |
Novitch Lab
|
| Street address |
650 Charles E Young Dr. S, CHS 66-200
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL21290 |
| Series (2) |
| GSE97919 |
Self-organized cerebral organoids with human specific features predict effective drugs to combat Zika virus infection [RNA-seq] |
| GSE104279 |
Self-organized cerebral organoids with human specific features predict effective drugs to combat Zika virus infection |
|
| Relations |
| BioSample |
SAMN06761386 |
| SRA |
SRX2742245 |
