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Sample GSM241153 Query DataSets for GSM241153
Status Public on Nov 06, 2007
Title WT strain grown in YPD under Normoxia (08-15-06_Philpott_YG_S98_9)
Sample type RNA
 
Source name 9-WT strain grown in YPD under Normoxia
Organism Saccharomyces cerevisiae
Characteristics BY4742 strain
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description Gene expression data from wild type strain under normoxic conditions
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Nov 02, 2007
Last update date Aug 14, 2011
Contact name Olga Protchenko
E-mail(s) olgap@intra.niddk.nih.gov
Organization name National Institutes of health
Department NIDDK
Street address 10 Center Dr, Bldg.10-Rm.9B-05
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL90
Series (1)
GSE9514 Changes in gene expression in response to heme deficiency and hypoxia

Data table header descriptions
ID_REF Probe_set Id
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-CreX-3_at 8700.757 P 4.43E-05
AFFX-BioB-5_st 23.713785 A 0.123572305
AFFX-BioB-M_st 15.567931 A 0.17532822
AFFX-BioB-3_st 20.470385 A 0.25079566
AFFX-BioC-5_st 11.567997 A 0.5445875
AFFX-BioC-3_st 22.194641 A 0.123572305
AFFX-BioDn-5_st 66.60199 A 0.16586144
AFFX-BioDn-3_st 57.557198 P 0.011384372
AFFX-CreX-5_st 60.573944 P 0.00618711
AFFX-CreX-3_st 147.07722 P 0.0044838
AFFX-DapX-5_at 18.24166 P 0.005564507
AFFX-DapX-M_at 44.502132 P 0.012546754
AFFX-DapX-3_at 69.30591 P 0.005564507
AFFX-LysX-5_at 0.9666834 A 0.8520612
AFFX-LysX-M_at 13.671301 A 0.5297595
AFFX-LysX-3_at 43.18118 P 5.81E-04
AFFX-PheX-5_at 1.3599467 A 0.84326845
AFFX-PheX-M_at 1.7827886 A 0.7834759
AFFX-PheX-3_at 44.061985 P 0.03966084
AFFX-ThrX-5_at 1.5209385 A 0.9105219

Total number of rows: 9335

Table truncated, full table size 274 Kbytes.




Supplementary file Size Download File type/resource
GSM241153.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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