NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM241150 Query DataSets for GSM241150
Status Public on Nov 06, 2007
Title hem1 strain grown in YPD w/o ALA (08-15-06_Philpott_YG_S98_3)
Sample type RNA
 
Source name 3-hem1 strain grown in YPD w/o ALA
Organism Saccharomyces cerevisiae
Characteristics BY4742 hem1 delta strain
Extracted molecule total RNA
Extraction protocol rizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description Gene expression data from hem1 strain under heme deplete conditions (-ALA)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Nov 02, 2007
Last update date Aug 14, 2011
Contact name Olga Protchenko
E-mail(s) olgap@intra.niddk.nih.gov
Organization name National Institutes of health
Department NIDDK
Street address 10 Center Dr, Bldg.10-Rm.9B-05
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL90
Series (1)
GSE9514 Changes in gene expression in response to heme deficiency and hypoxia

Data table header descriptions
ID_REF Probe_set Id
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
10620_at 743.22656 P 2.66E-04
10621_at 130.35007 P 0.017000513
10622_at 21.25796 A 0.17598942
10623_at 1314.7113 P 3.88E-04
10579_at 968.01056 P 2.66E-04
10580_at 150.80196 P 2.66E-04
10581_at 407.24847 P 3.88E-04
10582_at 126.88759 P 2.19E-04
10583_at 1725.3708 P 2.19E-04
10584_at 285.7367 P 2.19E-04
10585_at 134.164 P 2.19E-04
10586_at 166.10214 P 3.22E-04
10587_at 242.67546 P 0.001891623
10588_at 488.39603 P 2.19E-04
10589_at 216.55637 P 5.62E-04
10590_at 343.22726 P 5.62E-04
10591_at 480.72803 P 2.19E-04
10592_at 225.8638 P 0.002227676
10593_at 212.08368 P 2.66E-04
10594_at 707.57306 P 3.22E-04

Total number of rows: 9335

Table truncated, full table size 273 Kbytes.




Supplementary file Size Download File type/resource
GSM241150.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap