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Sample GSM241149 Query DataSets for GSM241149
Status Public on Nov 06, 2007
Title hem1 strain grown in YPD with 250 uM ALA (08-15-06_Philpott_YG_S98_2)
Sample type RNA
 
Source name 2 hem1 strain grown in YPD with 250 uM ALA
Organism Saccharomyces cerevisiae
Characteristics BY4742 hem1 delta strain
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description Gene expression data from hem1 strain under heme replete conditions (+ ALA)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Nov 02, 2007
Last update date Aug 14, 2011
Contact name Olga Protchenko
E-mail(s) olgap@intra.niddk.nih.gov
Organization name National Institutes of health
Department NIDDK
Street address 10 Center Dr, Bldg.10-Rm.9B-05
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL90
Series (1)
GSE9514 Changes in gene expression in response to heme deficiency and hypoxia

Data table header descriptions
ID_REF Probe_set Id
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.3585823 A 0.9874532
AFFX-MurIL10_at 1.1516645 A 0.8978349
AFFX-MurIL4_at 1.4717674 A 0.9164265
AFFX-MurFAS_at 4.008813 A 0.88388723
AFFX-BioB-5_at 245.77928 P 3.40E-04
AFFX-BioB-M_at 314.06506 P 4.43E-05
AFFX-BioB-3_at 333.6669 P 1.10E-04
AFFX-BioC-5_at 508.33716 P 7.01E-05
AFFX-BioC-3_at 426.225 P 5.17E-05
AFFX-BioDn-5_at 567.3779 P 4.43E-05
AFFX-BioDn-3_at 3037.35 P 4.43E-05
AFFX-CreX-5_at 3970.958 P 4.43E-05
AFFX-CreX-3_at 6526.8853 P 4.43E-05
AFFX-BioB-5_st 7.8595395 A 0.51489013
AFFX-BioB-M_st 7.7493343 A 0.4259623
AFFX-BioB-3_st 4.100436 A 0.5445875
AFFX-BioC-5_st 20.22088 A 0.32707947
AFFX-BioC-3_st 16.805511 A 0.15673153
AFFX-BioDn-5_st 25.392246 A 0.38259923
AFFX-BioDn-3_st 32.088577 P 0.015182557

Total number of rows: 9335

Table truncated, full table size 273 Kbytes.




Supplementary file Size Download File type/resource
GSM241149.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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