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Sample GSM241147 Query DataSets for GSM241147
Status Public on Nov 06, 2007
Title WT strain grown in YPD under Hypoxia (08-15-06_Philpott_YG_S98_10)
Sample type RNA
 
Source name 10-WT strain grown in YPD under Hypoxia
Organism Saccharomyces cerevisiae
Characteristics BY4742
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description Gene expression data from wild type strain under hypoxic conditions
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Nov 02, 2007
Last update date Aug 14, 2011
Contact name Olga Protchenko
E-mail(s) olgap@intra.niddk.nih.gov
Organization name National Institutes of health
Department NIDDK
Street address 10 Center Dr, Bldg.10-Rm.9B-05
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL90
Series (1)
GSE9514 Changes in gene expression in response to heme deficiency and hypoxia

Data table header descriptions
ID_REF Probe_set Id
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 1.285088 A 0.98861563
AFFX-MurIL10_at 0.5890876 A 0.96343094
AFFX-MurIL4_at 0.7884235 A 0.81486934
AFFX-MurFAS_at 1.178532 A 0.94155616
AFFX-BioB-5_at 260.61118 P 2.97E-04
AFFX-BioB-M_at 511.26324 P 4.43E-05
AFFX-BioB-3_at 408.7076 P 4.43E-05
AFFX-BioC-5_at 649.75903 P 5.17E-05
AFFX-BioC-3_at 449.17682 P 4.43E-05
AFFX-BioDn-5_at 703.9356 P 4.43E-05
AFFX-BioDn-3_at 4344.969 P 4.43E-05
AFFX-CreX-5_at 4578.0703 P 4.43E-05
AFFX-CreX-3_at 7663.786 P 4.43E-05
AFFX-BioB-5_st 18.797531 P 0.021901863
AFFX-BioB-M_st 16.60129 A 0.07800179
AFFX-BioB-3_st 19.902271 A 0.21652414
AFFX-BioC-5_st 8.1787195 A 0.5445875
AFFX-BioC-3_st 13.982873 A 0.19526644
AFFX-BioDn-5_st 50.796646 A 0.07800179
AFFX-BioDn-3_st 61.41816 P 0.002866996

Total number of rows: 9335

Table truncated, full table size 272 Kbytes.




Supplementary file Size Download File type/resource
GSM241147.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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