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Sample GSM2333248 Query DataSets for GSM2333248
Status Public on Jun 09, 2017
Title Sclera_rep3
Sample type RNA
 
Source name Sclera
Organism Homo sapiens
Characteristics sample type: Tissue
tissue: Sclera
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent, followed by purification and DNase I treatment with the Qiagen RNeasy miniprep kit according to the manufacturer's instructions.
Label Biotin
Label protocol RNA was amplified using the Ambion TotalPrep RNA amplication kit into biotinylated cRNA
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
SAMPLE 9
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Sep 30, 2016
Last update date Jun 09, 2017
Contact name Padmapriya Sathiyanathan
Organization name Genome Institute of Singapore
Department Stem Cell & Regenerative Biology
Street address Genome, 60 Biopolis Street
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL18405
Series (1)
GSE87526 Global expression analysis of the trabecular meshwork, cornea, sclera and trabecular meshwork-derived mesenchymal stem cells (TM-MSC)

Data table header descriptions
ID_REF
VALUE Quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -4.612799 0.6656626
ILMN_2055271 16.44616 0.07831325
ILMN_2383229 2.407189 0.3599398
ILMN_1806310 13.62632 0.1129518
ILMN_1779670 3.948283 0.2996988
ILMN_2321282 -1.106585 0.5135542
ILMN_1772582 1.108607 0.4262048
ILMN_1717783 -6.540114 0.7560241
ILMN_1814316 -17.68056 0.9774097
ILMN_2359168 10.40066 0.1430723
ILMN_1731507 1.273512 0.4096386
ILMN_1787689 -2.786586 0.5858434
ILMN_1745607 28.93673 0.02259036
ILMN_2136495 7.588315 0.2003012
ILMN_1668111 -7.688169 0.7906626
ILMN_2295559 16.50547 0.07831325
ILMN_1735045 72.34911 0.003012048
ILMN_1680754 12.02685 0.1325301
ILMN_2375184 1.958579 0.3810241
ILMN_1659452 5.164581 0.2650602

Total number of rows: 24526

Table truncated, full table size 746 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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