NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2126181 Query DataSets for GSM2126181
Status Public on Aug 29, 2016
Title Control-55
Sample type RNA
 
Source name Whole Blood from healthy control
Organism Homo sapiens
Characteristics tissue: whole blood
category: Control
dataset: Discovery
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction and filtering for transcripts common to Illumina HT12-V3
 
Submission date Apr 18, 2016
Last update date Aug 29, 2016
Contact name Victoria Wright
E-mail(s) v.wright@imperial.ac.uk
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE72809 Diagnosis of childhood bacterial and viral infection using host RNA expression [Discovery set]
GSE72829 Diagnosis of childhood bacterial and viral infection using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_55_Detection_Pval

Data table
ID_REF VALUE Control_55_Detection_Pval
ILMN_1762337 4.219318 0.3519481
ILMN_2055271 57.89957 0.02207792
ILMN_1736007 0.9138445 0.4155844
ILMN_2383229 -10.64891 0.6857143
ILMN_1806310 -1.136433 0.4558442
ILMN_1779670 -10.58612 0.6857143
ILMN_1653355 3.111552 0.3753247
ILMN_1717783 -28.16316 0.9337662
ILMN_1705025 16.59764 0.1623377
ILMN_1814316 12.41108 0.2220779
ILMN_2359168 -11.0782 0.6909091
ILMN_1731507 -32.00138 0.9675325
ILMN_1787689 -15.69585 0.7766234
ILMN_3241953 147.8464 0.001298701
ILMN_1745607 -31.42678 0.9597403
ILMN_2136495 -28.94196 0.9415584
ILMN_1668111 6.67136 0.2987013
ILMN_2295559 22.9253 0.1051948
ILMN_1735045 -24.02922 0.8896104
ILMN_1680754 66.2775 0.01168831

Total number of rows: 47323

Table truncated, full table size 1432 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap