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Sample GSM2126165 Query DataSets for GSM2126165
Status Public on Aug 29, 2016
Title Control-39
Sample type RNA
 
Source name Whole Blood from healthy control
Organism Homo sapiens
Characteristics tissue: whole blood
category: Control
dataset: Discovery
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction and filtering for transcripts common to Illumina HT12-V3
 
Submission date Apr 18, 2016
Last update date Aug 29, 2016
Contact name Victoria Wright
E-mail(s) v.wright@imperial.ac.uk
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE72809 Diagnosis of childhood bacterial and viral infection using host RNA expression [Discovery set]
GSE72829 Diagnosis of childhood bacterial and viral infection using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_39_Detection_Pval

Data table
ID_REF VALUE Control_39_Detection_Pval
ILMN_1762337 12.90439 0.1675325
ILMN_2055271 34.17878 0.03506494
ILMN_1736007 6.333072 0.287013
ILMN_2383229 0.7095136 0.3948052
ILMN_1806310 -2.813298 0.4688312
ILMN_1779670 -5.297795 0.5493507
ILMN_1653355 37.52252 0.02857143
ILMN_1717783 -22.60352 0.9207792
ILMN_1705025 -4.716504 0.525974
ILMN_1814316 5.268657 0.3025974
ILMN_2359168 -6.037 0.587013
ILMN_1731507 -3.971395 0.5051948
ILMN_1787689 -7.189565 0.6168831
ILMN_3241953 88.86459 0.006493506
ILMN_1745607 -15.01152 0.7987013
ILMN_2136495 -22.66726 0.9233766
ILMN_1668111 -3.435536 0.4883117
ILMN_2295559 15.65441 0.1428571
ILMN_1735045 -17.83532 0.848052
ILMN_1680754 55.46203 0.01168831

Total number of rows: 47323

Table truncated, full table size 1487 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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