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Sample GSM2126152 Query DataSets for GSM2126152
Status Public on Aug 29, 2016
Title Control-26
Sample type RNA
 
Source name Whole Blood from healthy control
Organism Homo sapiens
Characteristics tissue: whole blood
category: Control
dataset: Discovery
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction and filtering for transcripts common to Illumina HT12-V3
 
Submission date Apr 18, 2016
Last update date Aug 29, 2016
Contact name Victoria Wright
E-mail(s) v.wright@imperial.ac.uk
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE72809 Diagnosis of childhood bacterial and viral infection using host RNA expression [Discovery set]
GSE72829 Diagnosis of childhood bacterial and viral infection using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_26_Detection_Pval

Data table
ID_REF VALUE Control_26_Detection_Pval
ILMN_1762337 -2.339542 0.5168831
ILMN_2055271 51.96893 0.006493506
ILMN_1736007 1.533436 0.3545454
ILMN_2383229 -0.7594489 0.4584416
ILMN_1806310 -0.05803287 0.4181818
ILMN_1779670 -6.381168 0.6714286
ILMN_1653355 -0.4151191 0.4402598
ILMN_1717783 -16.4158 0.9376624
ILMN_1705025 12.03662 0.1142857
ILMN_1814316 -6.311878 0.6675324
ILMN_2359168 2.962864 0.3116883
ILMN_1731507 -13.52302 0.8818182
ILMN_1787689 -9.220776 0.774026
ILMN_3241953 58.21045 0.005194805
ILMN_1745607 -8.434837 0.7298701
ILMN_2136495 -12.63022 0.8701299
ILMN_1668111 8.294994 0.1766234
ILMN_2295559 3.008266 0.3103896
ILMN_1735045 -6.400738 0.674026
ILMN_1680754 18.16803 0.05454545

Total number of rows: 47323

Table truncated, full table size 1491 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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