GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1825616 Query DataSets for GSM1825616
Status Public on Aug 31, 2016
Title B_59704_86
Sample type RNA
Source name benign
Organism Homo sapiens
Characteristics gleason_score: 4+4
ethnicity: African-American
Extracted molecule total RNA
Extraction protocol RNA was extracted following the manufacturer's recommendations.
Label cy3
Label protocol The cRNA labeling was performed according to Protocol from Agilent Technologies Inc. (Santa Clara, CA) using the Agilent Quick Amp Labeling Kit (Agilent Technologies, Palo Alto, CA) following the two-colour manufacturer's protocol.
Hybridization protocol cRNA samples were hybridized to an Agilent Technologies Human Gene Expression 8x60K Microarray Agilent Technologies). The hybridization slides were washed, stabilized, dried, and immediately scanned.
Scan protocol Scanned with an Agilent Technologies Microarray Scanner using default parameters. Each sample represents one channel of a dual-channel array.
Data processing Expression arrays were processed using BioConductor (one color arrays, Quantile normalization). Also we combated the dataset by patient (as the “batch” variable).
Submission date Jul 16, 2015
Last update date Apr 23, 2018
Contact name Chad Creighton
Organization name Baylor College of Medicine
Department Biostatistics, Ducan Cancer Center
Street address One Baylor Plaza, Mail Stop: BCM305
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platform ID GPL16699
Series (1)
GSE71016 Gene expression profiling of African-American prostate cancer
Reanalyzed by GSE113533

Data table header descriptions
VALUE 'signal' a measure of the abundance of a transcript

Data table
1 28647.18237
2 11.92037726
3 14.68726652
4 1413.468779
5 97.20907014
6 26.52703137
7 24.39596361
8 36.27945849
9 2244.328002
10 314.3571284
11 33.10470121
12 3118.733342
13 361.1216915
14 25.48334212
15 15.79404596
16 28.72848762
17 98.88382742
18 142.9105264
19 71.42508956
20 2672.094992

Total number of rows: 62976

Table truncated, full table size 1090 Kbytes.

Supplementary file Size Download File type/resource
GSM1825616_B_59704_86.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap