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Sample GSM174759 Query DataSets for GSM174759
Status Public on Apr 10, 2007
Title renal_vesicle_wild_type_3
Sample type RNA
 
Source name renal vesicle from E12.5 wild type kidney
Organism Mus musculus
Characteristics Strain CD-1
Biomaterial provider Potter Laboratory
Treatment protocol Was prepared according to GUDMAP Potter protocols (GUDMAP.ORG)
Extracted molecule total RNA
Extraction protocol According to GUDMAP Potter laboratory protocols (GUDMAP.ORG)
Label biotin
Label protocol Used two round Epicentre kit, as per Potter GUDMAP.ORG protocols
 
Hybridization protocol Standard Affymetrix hybridization protocols, using five micrograms of target
Scan protocol Standard Affymetrix scan protocols.
Description No other informatin required.
Data processing Expression values generated with GCOS affymetrix software using all probe sets scaling factor 1500
 
Submission date Mar 12, 2007
Last update date Apr 09, 2007
Contact name Steven Potter
E-mail(s) steve.potter@cchmc.org
Organization name Children's hospital Medical Center
Department Developmental Biology
Lab Potter
Street address 3333 Burnet Ave.
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platform ID GPL1261
Series (1)
GSE7257 Laser capture-microarray analysis of Lim1 mutant kidney development.

Data table header descriptions
ID_REF
VALUE expression level
ABS_CALL absent/present call
DETECTION P-VALUE P-value for expression

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3718.91 P 4.42873e-05
AFFX-BioB-M_at 6517.53 P 4.42873e-05
AFFX-BioB-3_at 4641.62 P 5.16732e-05
AFFX-BioC-5_at 11583.8 P 4.42873e-05
AFFX-BioC-3_at 12278.1 P 4.42873e-05
AFFX-BioDn-5_at 22380 P 4.42873e-05
AFFX-BioDn-3_at 40235.2 P 4.42873e-05
AFFX-CreX-5_at 95138 P 5.16732e-05
AFFX-CreX-3_at 106873 P 4.42873e-05
AFFX-DapX-5_at 42.9861 A 0.455413
AFFX-DapX-M_at 10.7216 A 0.617411
AFFX-DapX-3_at 44.497 A 0.559354
AFFX-LysX-5_at 5.01505 A 0.941556
AFFX-LysX-M_at 9.89462 A 0.883887
AFFX-LysX-3_at 35.4955 A 0.239063
AFFX-PheX-5_at 7.37505 A 0.960352
AFFX-PheX-M_at 8.46294 A 0.9273
AFFX-PheX-3_at 120.15 A 0.48511
AFFX-ThrX-5_at 57.2499 A 0.313723
AFFX-ThrX-M_at 67.4056 A 0.102165

Total number of rows: 45101

Table truncated, full table size 1370 Kbytes.




Supplementary file Size Download File type/resource
GSM174759.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM174759.CHP.gz 5.2 Mb (ftp)(http) CHP
Processed data provided as supplementary file

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