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Sample GSM1717966 Query DataSets for GSM1717966
Status Public on Jan 15, 2016
Title MM087 gapmer3 rep4
Sample type RNA
Source name short term culture
Organism Homo sapiens
Characteristics treatment: gapmer3
cell type: melanoma short term culture
Treatment protocol Cells were treated with a control gapmer or GapmeR3 targeting LINC01212. Alternatively, LINC01212 was overexpressed.
Extracted molecule total RNA
Extraction protocol RNA was extracted using the miRNeasy mini kit (Qiagen)
Label Cy3
Label protocol Total RNA (100 ng) was labeled using the low input Quick Amp WT labeling kit (Agilent Technologies) according to the manufacturer’s instructions.
Hybridization protocol Labeled RNA was hybridized to a Agilent human gene expression microarray according to the manufacturer's instructions.
Scan protocol Arrays were scanned using the Agilent G2565CA Microarray Scanner and Scan Control Software 8.5 according to the manufacturer's instructions.
Data processing Probe intensities were extracted using Feature Extraction software (Agilent).
Submission date Jun 23, 2015
Last update date Jan 15, 2016
Contact name Pieter mestdagh
Organization name Center for Medical Genetics
Street address De Pintelaan 185
City Gent
ZIP/Postal code 9000
Country Belgium
Platform ID GPL20604
Series (2)
GSE70176 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy [1]
GSE70180 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy

Data table header descriptions
VALUE Probe intensities were background corrected and normalized (quantile normalization) using the LIMMA package in R.

Data table
GE_BrightCorner 16.10428196
DarkCorner 3.928435452
A_33_P3400429 7.002116511
A_33_P3255531 4.328412452
A_24_P940149 5.289132277
A_33_P3306510 11.56733245
CUST_21085_PI427704219 4.328412452
A_33_P3348313 11.19914079
A_33_P3403361 11.10518465
A_33_P3348973 6.851788238
A_23_P11070 3.1267168
A_24_P274615 6.629164739
CUST_1480_PI427704219 4.953836453
CUST_1068_PI427704219 4.008100902
CUST_13414_PI427704219 5.528424791
A_24_P928969 7.026498027
A_23_P100074 11.12815607
A_33_P3227506 6.659652945
CUST_17237_PI427704219 7.038834164
CUST_12234_PI427704219 4.638381578

Total number of rows: 57244

Table truncated, full table size 1614 Kbytes.

Supplementary file Size Download File type/resource
GSM1717966_US45103088_254164810138_S01_GE1_105_Dec08_2_4.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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