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Sample GSM1626636 Query DataSets for GSM1626636
Status Public on Sep 28, 2015
Title AG1BM64_2 (gene)
Sample type RNA
Source name Mixed RNA of both (1:64)
Organism Homo sapiens
Characteristics sample type: 1:64 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 50 ng of starting RNAs were amplified with NuGEN Ovation PicoSL WTA V2 kit and 2,500 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Gene 1.0 ST Arrays (Gene1.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_2
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL6244
Series (2)
GSE66628 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_Gene1.0) (exon analysis)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626598 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
7892501 3.86524
7892502 4.46057
7892503 3.46714
7892504 9.92875
7892505 2.98772
7892506 2.88217
7892507 6.50261
7892508 2.95674
7892509 10.1553
7892510 3.71877
7892511 3.87977
7892512 6.88853
7892513 1.7413
7892514 9.97895
7892515 10.26
7892516 6.73523
7892517 5.08237
7892518 1.66912
7892519 4.75383
7892520 10.1948

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1626636_23025.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM1626636_23025.rma-gene-default.chp.gz 256.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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