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Sample GSM1626631 Query DataSets for GSM1626631
Status Public on Sep 28, 2015
Title AG1BM4_1 (gene)
Sample type RNA
Source name Mixed RNA of both (1:4)
Organism Homo sapiens
Characteristics sample type: 1:4 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 50 ng of starting RNAs were amplified with NuGEN Ovation PicoSL WTA V2 kit and 2,500 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Gene 1.0 ST Arrays (Gene1.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL6244
Series (2)
GSE66628 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_Gene1.0) (exon analysis)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626593 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
7892501 4.47095
7892502 4.11849
7892503 4.22013
7892504 9.33848
7892505 2.47919
7892506 2.21744
7892507 5.47332
7892508 2.55376
7892509 11.7415
7892510 4.16347
7892511 3.40225
7892512 5.39311
7892513 2.80472
7892514 10.1168
7892515 9.80724
7892516 6.97359
7892517 5.12216
7892518 2.18712
7892519 4.47741
7892520 9.88354

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1626631_23020.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM1626631_23020.rma-gene-default.chp.gz 256.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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