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Sample GSM1626591 Query DataSets for GSM1626591
Status Public on Sep 28, 2015
Title AGO_1 (exon)
Sample type RNA
Source name Original Agilent Human Universal Reference RNA
Organism Homo sapiens
Characteristics sample type: pure reference RNA (AGO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 50 ng of starting RNAs were amplified with NuGEN Ovation PicoSL WTA V2 kit and 2,500 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Gene 1.0 ST Arrays (Gene1.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10739
Series (2)
GSE66628 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_Gene1.0) (exon analysis)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626629 (gene-level analysis)

Data table header descriptions
VALUE Quantification

Data table
7892501 6.18724 1.85991e-06
7892502 3.9975 0.000378879
7892503 3.22752 0.00465137
7892504 8.9797 4.1168e-07
7892505 2.2343 0.0234239
7892506 3.18591 0.133286
7892507 4.8128 0.00285493
7892508 5.53 4.20046e-07
7892509 12.2056 4.44414e-09
7892510 4.2304 0.0176321
7892511 4.07878 0.000205928
7892512 6.37916 6.87041e-05
7892513 2.76032 0.104622
7892514 10.3555 5.17436e-09
7892515 9.84939 4.55741e-09
7892516 7.86475 4.68385e-09
7892517 5.24097 0.0094219
7892518 2.22582 0.476397
7892519 4.82147 0.038691
7892520 9.60824 3.16924e-08

Total number of rows: 257430

Table truncated, full table size 6633 Kbytes.

Supplementary file Size Download File type/resource
GSM1626591_23018.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM1626591_23018.rma-exon-default-dabg.chp.gz 2.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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