|
Status |
Public on Nov 23, 2015 |
Title |
1354-168-Y5 |
Sample type |
RNA |
|
|
Source name |
PBMC
|
Organism |
Homo sapiens |
Characteristics |
pid: 1354_168 psi: 30 lag1psi: 29 chronicpsi: 0 age: 60 female: 1 hispanic: 0 black: 0 married: 1 lnincome: 11.3794 bmi: 24.1642 smoke: 1 alcohol: 1 cesd: 3 pss: 6 socsupp: 14.3333 monocytepct: Missing cd3d: 11.5511 cd3e: 9.1623 cd4: 8.1159 cd8a: 10.9058 cd19: 12.5239 ncam1: 7.0121 fcgr3a: 6.5832 cd14: 12.2378
|
Extracted molecule |
total RNA |
Extraction protocol |
Primary peripheral blood mononuclear cells were isolated and total RNA was extracted using Qiagen RNEasy.
|
Label |
biotin
|
Label protocol |
Ambion TotalPrep RNA amplification with biotin labeling for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).
|
|
|
Hybridization protocol |
Illumina cRNA hybridization protocol for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).
|
Scan protocol |
Standard Illumina scan protocol for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).
|
Description |
raw data file column: 5384103003_C.AVG_Signal Illumina Human Ref-8 BeadArray
|
Data processing |
Raw probe intensity values and quantile-normalized gene expression values were generated by Illumina GenomeStudio software using Gene Expression module 1.1.1. All available data are provided, with no additional filtering.
|
|
|
Submission date |
Jan 22, 2015 |
Last update date |
Nov 23, 2015 |
Contact name |
Steve Cole |
Organization name |
UCLA School of Medicine
|
Department |
Medicine
|
Street address |
11-934 Factor Bldg, UCLA
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-1678 |
Country |
USA |
|
|
Platform ID |
GPL10399 |
Series (1) |
GSE65213 |
Leukocyte gene expression as a function of perceived social isolation (PSI): Year 5 |
|