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Sample GSM158360 Query DataSets for GSM158360
Status Public on Jan 26, 2007
Title emN1 P9 hair follicle, biological rep2
Sample type RNA
 
Source name hair follicles from embryo-deleted area (absence of functional Notch1)
Organism Mus musculus
Characteristics hair bulbs only from 9-day-old mice
Extracted molecule total RNA
Extraction protocol RNeasy mini kit (Qiagen, CA)
Label biotin
Label protocol refer to Washington University Genechip Core Facility
 
Hybridization protocol refer to Washington University Genechip Core Facility
Scan protocol refer to Washington University Genechip Core Facility
Description Gene expression data from Notch1-deficient hair bulb.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Jan 25, 2007
Last update date Aug 28, 2018
Contact name Raphael Kopan
E-mail(s) raphael.kopan@cchmc.org
Organization name Cincinnati Children's Hospital
Department Developmental Biology
Lab Kopan Lab
Street address 3333 Burnet Avenue
City Cincinnati
State/province Ohio
ZIP/Postal code 45011
Country USA
 
Platform ID GPL1261
Series (1)
GSE6867 Expression data in the absence of Notch1 in hair follicles
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION-P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION-P-VALUE
AFFX-BioB-5_at 81.8197 A 0.5
AFFX-BioB-M_at 2.22298 A 0.99966
AFFX-BioB-3_at 11.8806 A 0.760937
AFFX-BioC-5_at 13.2874 A 0.645596
AFFX-BioC-3_at 14.2029 A 0.910522
AFFX-BioDn-5_at 8.88416 A 0.883887
AFFX-BioDn-3_at 50.0218 A 0.860518
AFFX-CreX-5_at 100.795 A 0.455413
AFFX-CreX-3_at 409.011 P 0.00762003
AFFX-DapX-5_at 52.7786 A 0.123572
AFFX-DapX-M_at 75.8337 A 0.16584
AFFX-DapX-3_at 126.737 A 0.195266
AFFX-LysX-5_at 111713 P 4.42873e-05
AFFX-LysX-M_at 109587 P 4.42873e-05
AFFX-LysX-3_at 120623 P 4.42873e-05
AFFX-PheX-5_at 97993.6 P 4.42873e-05
AFFX-PheX-M_at 129813 P 4.42873e-05
AFFX-PheX-3_at 113461 P 4.42873e-05
AFFX-ThrX-5_at 39682.9 P 4.42873e-05
AFFX-ThrX-M_at 83483.2 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1385 Kbytes.




Supplementary file Size Download File type/resource
GSM158360.cel.gz 3.5 Mb (ftp)(http) CEL

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