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Sample GSM1572359 Query DataSets for GSM1572359
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 26
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 26
Sex: female
sexpredictedusingdnamethdata: female
age: 69
dna methylation age: 72.030796546698
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.282333154
cg00000108 0.908525544
cg00000109 0.757676954
cg00000165 0.175224205
cg00000236 0.768737926
cg00000289 0.621854256
cg00000292 0.414365213
cg00000321 0.307337566
cg00000363 0.208748373
cg00000622 0.013513514
cg00000658 0.823579191
cg00000714 0.106911171
cg00000721 0.959737978
cg00000734 0.059158605
cg00000769 0.02800789
cg00000807 0.75414385
cg00000884 0.857998835
cg00000905 0.073552366
cg00000924 0.654776178
cg00000948 0.920061567

Total number of rows: 485577

Table truncated, full table size 10846 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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