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Sample GSM1519013 Query DataSets for GSM1519013
Status Public on Mar 01, 2015
Title PC3 cells treated with vehicle control (SAH), biological replicate 3
Sample type genomic
Source name PC3 cells treated with vehicle control (SAH)
Organism Homo sapiens
Characteristics cell line: PC3
cell type: human invasive prostate cancer cell line
treatment: S-adenosylhomocysteine (SAH) vehicle control
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from human prostate cancer cell lines using the Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing BeadStudio software v3.2
Submission date Oct 03, 2014
Last update date Mar 01, 2015
Contact name Barbara Stefanska
Organization name The University of British Columbia
Department Land and Food Systems
Lab Stefanska Lab
Street address 2205 East Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
Platform ID GPL13534
Series (1)
GSE62053 S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.596917
cg00000108 0.9137582
cg00000109 0.900182
cg00000165 0.9014713
cg00000236 0.8630775
cg00000289 0.7414879
cg00000292 0.9110634
cg00000321 0.7621722
cg00000363 0.4216712
cg00000622 0.02170473
cg00000658 0.8136019
cg00000714 0.1934773
cg00000721 0.9331261
cg00000734 0.07966274
cg00000769 0.05856336
cg00000807 0.8836848
cg00000884 0.7934133
cg00000905 0.1179828
cg00000924 0.5286868
cg00000948 0.9096339

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary file Size Download File type/resource
GSM1519013_8221924102_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1519013_8221924102_R05C02_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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