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GEO accession:
Sample GSM149230
Query DataSets for GSM149230
Status
Public on Jan 01, 2007
Title
mKS3
Sample type
RNA
Source name
mKS3
Organism
Mus musculus
Characteristics
Mouse KS tumor. Sample number 3
Extracted molecule
total RNA
Extraction protocol
RNA extration using TRIzol reagent(
http://www.invitrogen.com/content/sfs/manuals/15596026.pdf
) and purified using Qiagen Rneasy Mini Kit (
http://www1.qiagen.com/literature/protocols/pdf/RY20.pdf
)
Label
Biotin
Label protocol
Standard affymetrix protocol
http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Hybridization protocol
Standard affymetrix protocol
http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Scan protocol
Standard affymetrix protocol-GeneChip Scanner 3000 using the protocol
http://www.affymetrix.com/support/downloads/manuals/10k_manual.pdf
Description
Mouse KS tumor. Sample number 3
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Dec 07, 2006
Last update date
Aug 28, 2018
Contact name
Enrique Mesri
E-mail(s)
emesri@med.miami.edu
Phone
305-243-5659
Organization name
University of Miami
Department
Microbiology and Immunology
Street address
1550 NW 10th Ave, PAP-109B
City
Miami
State/province
FL
ZIP/Postal code
33136
Country
USA
Platform ID
GPL1261
Series (1)
GSE6482
mECK36: a cell and animal model of virally induced Kaposi's sarcoma
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
Affymetrix MAS 5.0 signal intensity
ABS_CALL
Affymetrix MAS 5.0 detection call
DETECTION P-VALUE
Affymetrix MAS 5.0 detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
310
P
0.004484
AFFX-BioB-M_at
441.7
P
0.001248
AFFX-BioB-3_at
182.2
P
0.00034
AFFX-BioC-5_at
676.8
P
0.000147
AFFX-BioC-3_at
784.2
P
0.000044
AFFX-BioDn-5_at
1134.6
P
0.000044
AFFX-BioDn-3_at
3047.3
P
0.000297
AFFX-CreX-5_at
8451.2
P
0.000052
AFFX-CreX-3_at
9818.8
P
0.000044
AFFX-DapX-5_at
20
M
0.054213
AFFX-DapX-M_at
30.6
A
0.175328
AFFX-DapX-3_at
8.9
A
0.941556
AFFX-LysX-5_at
2.8
A
0.724854
AFFX-LysX-M_at
5.4
A
0.86866
AFFX-LysX-3_at
13
A
0.139482
AFFX-PheX-5_at
2.8
A
0.860518
AFFX-PheX-M_at
2.6
A
0.843268
AFFX-PheX-3_at
19.3
A
0.60308
AFFX-ThrX-5_at
10.8
A
0.760937
AFFX-ThrX-M_at
20.4
A
0.514891
Total number of rows:
45101
Table truncated, full table size
1208 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM149230.CEL.gz
3.6 Mb
(ftp)
(http)
CEL
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