NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM148615 Query DataSets for GSM148615
Status Public on Nov 01, 2008
Title Xenograft treated with BEV 2-1318 avastin 5a
Sample type RNA
 
Source name Xenografts of Hepatocellular Carcinoma
Organism Homo sapiens
Characteristics Tissue: liver
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
 
Hybridization protocol Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
Description Gene expression data for xenograft treated with BEV
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Dec 06, 2006
Last update date Aug 28, 2018
Contact name Kun Yu
E-mail(s) yukun@omniarray.com
Phone +65 64368390
Organization name National Cancer Centre
Department Cellular & Molecular Research
Street address
City Singapore
ZIP/Postal code 169610
Country Singapore
 
Platform ID GPL570
Series (1)
GSE6465 Expression data of Hepatocellular Carcinoma
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call. P<0.04 is used to filter the intensity value of probe

Data table
ID_REF VALUE DETECTION P-VALUE
210677_at 326.51413 0.17138672
214524_at 42.96812 0.6010742
208358_s_at 985.84894 0.001220703
207570_at 23.655165 0.7993164
207316_at 12.147411 0.96240234
216341_s_at 9.381639 0.75390625
206912_at 8.729998 0.66552734
210690_at 61.8401 0.018554688
207048_at 177.97783 0.111572266
207061_at 212.37794 0.17138672
207893_at 12.626954 0.9194336
207258_at 11.759928 0.98583984
220646_s_at 61.802708 0.7258301
207262_at 68.05787 0.2668457
214520_at 49.085625 0.69628906
207250_at 24.773512 0.63378906
207073_at 20.489716 0.8503418
220506_at 9.001 0.9699707
207652_s_at 28.383406 0.56762695
220288_at 126.73003 0.056152344

Total number of rows: 54675

Table truncated, full table size 1658 Kbytes.




Supplementary file Size Download File type/resource
GSM148615.CEL.gz 4.1 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap