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Sample GSM1437777 Query DataSets for GSM1437777
Status Public on Aug 12, 2014
Title PBMC genomic DNA_Control7
Sample type genomic
 
Source name Control PBMC
Organism Homo sapiens
Characteristics gender: female
subject id: Control subject 7
disease state: Control
cell type: peripheral blood mononuclear cells (PBMC)
Extracted molecule genomic DNA
Extraction protocol Omega EZNA Tissue DNA Kit; Qiagen MinElute Reaction Cleanup Kit; Genome Quebec sample processing protocols
Label Cy3,Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol Standard Illumina Protocol
Description PBMC genomic DNA from Control subject 7
7985#WG0153568-DNA#B07#G00162
Data processing Illumina Genome Studio; the non_normalized.txt contains unmethylated (A) and methylated (B) signal intensities.
 
Submission date Jul 16, 2014
Last update date Aug 12, 2014
Contact name Patrick McGowan
E-mail(s) patrick.mcgowan@utoronto.ca
Organization name University of Toronto Scarborough
Department Biological Sciences
Lab SW326
Street address 1265 Military Trail
City Toronto
State/province Ontario
ZIP/Postal code M1C 1A4
Country Canada
 
Platform ID GPL13534
Series (1)
GSE59489 DNA methylation modifications associated with Chronic Fatigue Syndrome

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.48799 0
cg00000108 0.93574 0
cg00000109 0.81937 0
cg00000165 0.21971 0
cg00000236 0.7145 0
cg00000289 0.7066 0
cg00000292 0.80279 0
cg00000321 0.2917 0
cg00000363 0.38449 0
cg00000622 0.02501 0
cg00000658 0.81682 0
cg00000714 0.19624 0
cg00000721 0.91232 0
cg00000734 0.07667 0
cg00000769 0.04105 0
cg00000807 0.82376 0
cg00000884 0.81113 0
cg00000905 0.10101 0
cg00000924 0.56379 0
cg00000948 0.86576 0

Total number of rows: 485577

Table truncated, full table size 9917 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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