GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1412247 Query DataSets for GSM1412247
Status Public on Jul 31, 2014
Title genomic DNA from bone marrow CD34+ cells 5729917060_RO5CO2
Sample type genomic
Source name normal bone marrow progenitor cells
Organism Homo sapiens
Characteristics sample id: CD34-3
gender: Male
age at diagnosis in years: n.a.
batch: batch1
cell type: normal bone marrow progenitor cells
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal bone marrow progenitor cells
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917060_R05C02 detect.p

Data table
ID_REF VALUE 5729917060_R05C02 detect.p
cg00050873 0.857804517 0
cg00212031 0.022477029 0
cg00213748 0.973766396 0
cg00214611 0.017545524 0
cg00455876 0.795836044 0
cg01707559 0.036247335 0
cg02004872 0.005393088 0
cg02011394 0.958795876 0
cg02050847 0.988161597 0
cg02233190 0.010189396 0
cg02494853 0.007540019 0
cg02839557 0.017501716 0
cg02842889 0.002356766 0
cg03052502 0.986618856 0
cg03155755 0.942709467 0
cg03244189 0.004936425 0
cg03443143 0.911506686 0
cg03683899 0.002839248 0
cg03695421 0.732365412 0
cg03706273 0.004838783 0

Total number of rows: 485512

Table truncated, full table size 11758 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap