|
| Status |
Public on Jan 01, 2018 |
| Title |
mESC [re-analysis] |
| Sample type |
SRA |
| |
|
| Source name |
mouse embryonic stem cells(mESCs)
|
| Organism |
Mus musculus |
| Characteristics |
cell type: OG2 transgenetic mouse embryonic stem cells(OG2ES)
time: P5
tag: 1/2 129SVJ+3/8 C57B6+1/8 CBA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted by Trizol-based protocol.
The libraries were prepared according to Illumina TruSeq® RNA sample preparation Kit.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina MiSeq |
| |
|
| Description |
WT OG2ES
GSM1229023
|
| Data processing |
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence.
Transcripts per million(TPM) were calculated using RSEM(1.1.21) with parameters(-p 8 --estimated-rspd --no-bam-output).
Genome_build: mm9
|
| |
|
| Submission date |
May 20, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Lihui Lin |
| E-mail(s) |
lin_lihui@gibh.ac.cn
|
| Phone |
020-32015291
|
| Organization name |
Guangzhou Institutes Of Biomedicine and Health Chinese Academy Of Science
|
| Department |
Stem cell
|
| Lab |
Pei Duanqing
|
| Street address |
No.190, Kaiyuan Street
|
| City |
Guangzhou |
| State/province |
Guangdong |
| ZIP/Postal code |
GD20 |
| Country |
China |
| |
|
| Platform ID |
GPL16417 |
| Series (1) |
| GSE57546 |
A Direct and Accelerated Platform for Analyzing Reprogramming by Defined factors |
|
| Relations |
| Reanalysis of |
GSM1229023 |
| BioSample |
SAMN02795956 |
| SRA |
SRX547505 |
