GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1144502 Query DataSets for GSM1144502
Status Public on Jun 04, 2013
Title Primary tumour region 4 RMH8
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 4
subject: RMH8
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 4
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.0680474003801235
CN_473964 NULL -0.0993521382261324
CN_473965 NULL -0.184835194131248
CN_477984 NULL -0.0835545259382063
CN_473981 NULL -0.0429362201224235
CN_473982 NULL -0.169445335585989
CN_497980 NULL 0.152256028968128
CN_497981 NULL -0.0898194744189327
CN_513369 NULL 0.239808369067313
CN_513370 NULL -0.0137950332858906
CN_517762 NULL 0.239839037513418
CN_517763 NULL -0.668699407465677
CN_502615 NULL 0.786466105274124
CN_502613 NULL -0.252871363056364
CN_502614 NULL 0.252436551715308
CN_502616 NULL 0.332924673235627
CN_502842 NULL 0.136156426097222
CN_502843 NULL -0.0571957752842148
CN_466171 NULL -0.0100001994956958
CN_466172 NULL -0.0794224978917403

Total number of rows: 1782073

Table truncated, full table size 73934 Kbytes.

Supplementary file Size Download File type/resource
GSM1144502_RMH8-R4.CEL.gz 27.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap