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Sample GSM1144501 Query DataSets for GSM1144501
Status Public on Jun 04, 2013
Title Primary tumour region 3 RMH8
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 3
subject: RMH8
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 3
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.296456186199256
CN_473964 NULL -0.127190483068757
CN_473965 NULL -0.0190995561323996
CN_477984 NULL -0.179694205421024
CN_473981 NULL -0.132611762888828
CN_473982 NULL 0.00180073794603815
CN_497980 NULL 0.0785678084020893
CN_497981 NULL 0.229145339410839
CN_513369 NULL 0.44553526019967
CN_513370 NULL -0.188439505987156
CN_517762 NULL 0.332570975590888
CN_517763 NULL -0.405461924258055
CN_502615 NULL 0.683213920511794
CN_502613 NULL -0.198214569826905
CN_502614 NULL 0.629605747901227
CN_502616 NULL 0.314613576275869
CN_502842 NULL 0.1868722742885
CN_502843 NULL -0.0436148058269074
CN_466171 NULL 0.219398243291258
CN_466172 NULL 0.149314226808965

Total number of rows: 1782073

Table truncated, full table size 73901 Kbytes.

Supplementary file Size Download File type/resource
GSM1144501_RMH8-R3.CEL.gz 27.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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