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Sample GSM1144481 Query DataSets for GSM1144481
Status Public on Jun 04, 2013
Title Primary tumour region 5 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 5
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 5
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.592832453254755
CN_473964 NULL -0.0207188587636906
CN_473965 NULL -0.0472025578407071
CN_477984 NULL -0.207902212423919
CN_473981 NULL 0.433052478106073
CN_473982 NULL -0.287327018068782
CN_497980 NULL 0.0449384064224443
CN_497981 NULL -0.331275248320022
CN_513369 NULL -0.170784665354282
CN_513370 NULL -0.0925662249301833
CN_517762 NULL 0.195435071000077
CN_517763 NULL -0.329283163480002
CN_502615 NULL 0.140730911269737
CN_502613 NULL -0.333612743218632
CN_502614 NULL 0.0561613692296649
CN_502616 NULL 0.0305769590150989
CN_502842 NULL -0.0351744557621477
CN_502843 NULL 0.110983339457924
CN_466171 NULL 0.213134782678156
CN_466172 NULL 0.00362837451004313

Total number of rows: 1782073

Table truncated, full table size 73822 Kbytes.

Supplementary file Size Download File type/resource
GSM1144481_RK29-R5.CEL.gz 26.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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