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Sample GSM1144471 Query DataSets for GSM1144471
Status Public on Jun 04, 2013
Title Normal blood RK23
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: blood
subject: RK23
disease state: normal
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description blood
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.261331542123608
CN_473964 NULL -0.281975209804098
CN_473965 NULL -0.0725680109774847
CN_477984 NULL -0.198252069568281
CN_473981 NULL -0.549936099816699
CN_473982 NULL 0.292921181811237
CN_497980 NULL -0.120383880525341
CN_497981 NULL 0.153847348193457
CN_513369 NULL -0.341910885132461
CN_513370 NULL -0.10988010719246
CN_517762 NULL -0.388850119662881
CN_517763 NULL -0.218056373770749
CN_502615 NULL 0.754812644161927
CN_502613 NULL -0.557964274105078
CN_502614 NULL -0.618206383047921
CN_502616 NULL -1.87261148432475
CN_502842 NULL -0.0560333114873855
CN_502843 NULL -0.164179913238862
CN_466171 NULL -0.216000049718752
CN_466172 NULL -0.184589879157003

Total number of rows: 1782073

Table truncated, full table size 73924 Kbytes.

Supplementary file Size Download File type/resource
GSM1144471_RK23-N.CEL.gz 27.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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