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Sample GSM1144468 Query DataSets for GSM1144468
Status Public on Jun 04, 2013
Title Primary tumour region 3 RK21
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 3
subject: RK21
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 3
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.308619300503143
CN_473964 NULL -0.0820829275887421
CN_473965 NULL -1.68349461757098
CN_477984 NULL -0.0925403330903924
CN_473981 NULL -0.123817965896466
CN_473982 NULL 0.00663254798358703
CN_497980 NULL 0.0700540008331634
CN_497981 NULL 0.134657638544455
CN_513369 NULL -0.351096157254508
CN_513370 NULL -0.00404027913760852
CN_517762 NULL -0.279544190472615
CN_517763 NULL -0.302516731677654
CN_502615 NULL 0.0394783926677481
CN_502613 NULL -0.097993934717091
CN_502614 NULL 0.0281896588957798
CN_502616 NULL -0.0779081094114612
CN_502842 NULL 0.200649750209916
CN_502843 NULL -0.0699654545687335
CN_466171 NULL 0.0514273608252652
CN_466172 NULL -0.200253649077981

Total number of rows: 1782073

Table truncated, full table size 74072 Kbytes.

Supplementary file Size Download File type/resource
GSM1144468_RK21-R3.CEL.gz 27.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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