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Sample GSM1144461 Query DataSets for GSM1144461
Status Public on Jun 04, 2013
Title Primary tumour region 6 P7
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 6
subject: P7
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 6
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.369584432775632
CN_473964 NULL 0.103515239615144
CN_473965 NULL -0.11568117384779
CN_477984 NULL -0.292837569609131
CN_473981 NULL -0.00890124044866999
CN_473982 NULL -0.525170158932338
CN_497980 NULL 0.0942828778882218
CN_497981 NULL 0.117387877800155
CN_513369 NULL 0.397813026581637
CN_513370 NULL -0.177662283537917
CN_517762 NULL 0.200030679519288
CN_517763 NULL -0.435461949738954
CN_502615 NULL 0.423142323714497
CN_502613 NULL -0.00452205280062512
CN_502614 NULL 0.564643607428052
CN_502616 NULL 0.875113585852257
CN_502842 NULL -0.0951504561952064
CN_502843 NULL -0.381524761557425
CN_466171 NULL -0.224083342068261
CN_466172 NULL -0.475404309334744

Total number of rows: 1782073

Table truncated, full table size 74139 Kbytes.

Supplementary file Size Download File type/resource
GSM1144461_P7-R6.CEL.gz 28.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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