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Sample GSM1144452 Query DataSets for GSM1144452
Status Public on Jun 04, 2013
Title Primary tumour region 10 P6
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 10
subject: P6
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 7
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.238080701972038
CN_473964 NULL 0.129837317554339
CN_473965 NULL 0.183873187745362
CN_477984 NULL -0.148059518450888
CN_473981 NULL -1.17917336053175
CN_473982 NULL -0.397648527343336
CN_497980 NULL 0.0121883626108165
CN_497981 NULL 0.487852830033635
CN_513369 NULL -0.778333620840787
CN_513370 NULL -0.0774653191160971
CN_517762 NULL -1.0665064410459
CN_517763 NULL 0.119434618907264
CN_502615 NULL -0.309132437995747
CN_502613 NULL -0.488590171077789
CN_502614 NULL -0.33094336844772
CN_502616 NULL -1.79301683912144
CN_502842 NULL 0.0286360959889314
CN_502843 NULL -0.21286568815837
CN_466171 NULL 0.20447219078328
CN_466172 NULL -0.301726656386878

Total number of rows: 1782073

Table truncated, full table size 74053 Kbytes.

Supplementary file Size Download File type/resource
GSM1144452_P6-R10.CEL.gz 27.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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