GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1144449 Query DataSets for GSM1144449
Status Public on Jun 04, 2013
Title Primary tumour region 5 P6
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 5
subject: P6
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 5
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.960464950283917
CN_473964 NULL -0.526587055757542
CN_473965 NULL -0.380023382907485
CN_477984 NULL -0.107692951514038
CN_473981 NULL -0.600490635305014
CN_473982 NULL -0.516707360049128
CN_497980 NULL 0.590895174237599
CN_497981 NULL 0.485902816954835
CN_513369 NULL 0.165605245729362
CN_513370 NULL -0.685219293452717
CN_517762 NULL -0.790310323165988
CN_517763 NULL -0.311990997455341
CN_502615 NULL 0.268340692542103
CN_502613 NULL -0.0374669027326494
CN_502614 NULL 0.260555292409866
CN_502616 NULL -2.30204155762915
CN_502842 NULL -0.342996409043004
CN_502843 NULL 0.141290836088563
CN_466171 NULL 0.0856714913493404
CN_466172 NULL -0.409086486108496

Total number of rows: 1782073

Table truncated, full table size 74057 Kbytes.

Supplementary file Size Download File type/resource
GSM1144449_P6-R5.CEL.gz 28.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap