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Sample GSM1144447 Query DataSets for GSM1144447
Status Public on Jun 04, 2013
Title Primary tumour region 3 P6
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 3
subject: P6
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 3
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.0249489155708966
CN_473964 NULL 0.274423650340586
CN_473965 NULL -0.0185281047297256
CN_477984 NULL 0.606643791289138
CN_473981 NULL -1.59495485607164
CN_473982 NULL -0.309064322518636
CN_497980 NULL -0.0299581997105734
CN_497981 NULL 0.240996224219001
CN_513369 NULL -0.871479571126921
CN_513370 NULL -0.279422976638001
CN_517762 NULL -0.28034268002454
CN_517763 NULL -0.287602131116051
CN_502615 NULL 0.604676097482386
CN_502613 NULL -0.0470339704748749
CN_502614 NULL -0.882398560548981
CN_502616 NULL -1.36236952521846
CN_502842 NULL -0.165521357836068
CN_502843 NULL 0.330189624572747
CN_466171 NULL 0.0834510844924469
CN_466172 NULL 0.00623164326656864

Total number of rows: 1782073

Table truncated, full table size 73813 Kbytes.

Supplementary file Size Download File type/resource
GSM1144447_P6-R3.CEL.gz 25.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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