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Sample GSM1144443 Query DataSets for GSM1144443
Status Public on Jun 04, 2013
Title Primary tumour region 7 P5
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 7
subject: P5
disease state: clear cell Renal Cell Carinoma
batch: 1
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 7
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.44003100940819
CN_473964 NULL 0.246121722507892
CN_473965 NULL 0.076534598531641
CN_477984 NULL -0.104611514701538
CN_473981 NULL 0.272876139169506
CN_473982 NULL -0.229264535723786
CN_497980 NULL -0.186544909694229
CN_497981 NULL 0.0127583396542243
CN_513369 NULL -0.847279059904305
CN_513370 NULL 0.124995759157565
CN_517762 NULL -0.34965911617469
CN_517763 NULL -0.266015788694896
CN_502615 NULL 0.328414261067128
CN_502613 NULL -0.732726546496926
CN_502614 NULL -0.00911923941854759
CN_502616 NULL 0.442933650744589
CN_502842 NULL -0.147776466825093
CN_502843 NULL 0.135614981966375
CN_466171 NULL -0.422255637217142
CN_466172 NULL -0.284624495173219

Total number of rows: 1782073

Table truncated, full table size 73835 Kbytes.

Supplementary file Size Download File type/resource
GSM1144443_P5-R7.CEL.gz 26.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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