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Sample GSM1144437 Query DataSets for GSM1144437
Status Public on Jun 04, 2013
Title Primary tumour region 1 P5
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 1
subject: P5
disease state: clear cell Renal Cell Carinoma
batch: 1
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 1
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.250652259575424
CN_473964 NULL -0.0551406464944734
CN_473965 NULL 0.0613183373636248
CN_477984 NULL 0.0306415794791187
CN_473981 NULL 0.215252041416329
CN_473982 NULL -0.0834366697989372
CN_497980 NULL 0.0731530973126039
CN_497981 NULL -0.284554736274117
CN_513369 NULL -0.782419340249224
CN_513370 NULL -0.0505777406124522
CN_517762 NULL 0.118019738475836
CN_517763 NULL -0.219570899640789
CN_502615 NULL -0.0703425097876531
CN_502613 NULL -0.607821015842413
CN_502614 NULL 0.175614209391326
CN_502616 NULL 0.112172742608994
CN_502842 NULL -0.398081449414205
CN_502843 NULL -0.200407666999875
CN_466171 NULL -0.321862828947662
CN_466172 NULL -0.286407566635163

Total number of rows: 1782073

Table truncated, full table size 73713 Kbytes.

Supplementary file Size Download File type/resource
GSM1144437_P5-R1.CEL.gz 26.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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