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Status |
Public on Jun 10, 2013 |
Title |
Somatotroph adenoma 323 |
Sample type |
RNA |
|
|
Source name |
Adenoma_tertile 3_SA treatment
|
Organism |
Homo sapiens |
Characteristics |
gender: Male age: 60 adenoma: pituitary e-cadherin expression: high treatment: SA
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction followed by Rneasy clean up kit (qiagen) was performed according to the manufacturer´s instruction
|
Label |
biotin
|
Label protocol |
Double-stranded cDNA and biotin-labeled cRNA probes were made from 5 μg of total RNA by use of GeneChip® Expression 3' Amplification One-Cycle Target Labeling kit (Affymetrix).
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|
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Hybridization protocol |
The cRNA was hybridized to HG U133 plus 2.0 Arrays (Affymetrix) followed by washing and staining on the GeneChips Fluidics Station 450 (Affymetrix)
|
Scan protocol |
Signal intensities were detected by Affymetrix GeneChip Scanner 3000
|
Data processing |
The scanned images were processed using GCOS 1.4 (Affymetrix) according to the manufacturer. The resulting data sets (CEL files) were imported into ArrayAssist Expression Software (v5.2.0;Iobion Informatics LLC) and normalized using the PLIER algorithm in Array Assist to calculate relative signal values for each probe set.
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Submission date |
Apr 23, 2013 |
Last update date |
Jun 10, 2013 |
Contact name |
Tove Lekva |
E-mail(s) |
tove.lekva@medisin.uio.no, tove.lekva@ous-hf.no
|
Organization name |
OUS-HF, Rikshospitalet
|
Department |
Section of Specialized Endocrinology and Institute for Internal Medicine
|
Street address |
Sognsvannsveien 20
|
City |
Oslo |
ZIP/Postal code |
0027 |
Country |
Norway |
|
|
Platform ID |
GPL6244 |
Series (1) |
GSE46311 |
Gene expression analysis of growth hormone producing somatotroph pituitary adenomas |
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