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Sample GSM1068579 Query DataSets for GSM1068579
Status Public on Jan 20, 2015
Title 98B-821
Sample type RNA
Source name UCMD
Organism Homo sapiens
Characteristics tissue: skeletal muscle
gender: male
age: 5 years
sample type: Ullrich Congenital Muscular Dystrophy
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from skeletal muscle biopsies with Qiagen (Qiagen, Hilden, Germany) RNeasy Fibrous Tissue mini kit following the manufacturer’s instructions
Label cy3
Label protocol RNA (500 ng) was labeled using Agilent's Low Input RNA Labeling Kit, which involves reverse transcribing the mRNA in the presence of T7-oligo-dT primer to produce cDNA and then in vitro transcribing with T7 RNA polymerase in the presence of Cy3-CTP
Hybridization protocol Labelled cRNAs were hybridised to the Agilent Human SurePrintGE, 8x60K according to manufacturer´s instructions
Scan protocol The arrays were washed, dried by centrifugation and scanned on an Agilent G2565BA microarray scanner at 100% PMT and 5 μm resolution
Description patient reference in corresponding publication: P4
Data processing Bioconductor limma package, using background correction (normexp) and quantiles normalization between arrays for final values
Submission date Jan 23, 2013
Last update date Jan 20, 2015
Contact name Susana Kalko
Organization name IDIBAPS
Department Bioinformatics Platform
Street address c/Rosello 153
City Barcelona
State/province BARCELONA
ZIP/Postal code 08036
Country Spain
Platform ID GPL13607
Series (1)
GSE43698 Muscle from patients with mitochondrial myopathies and congenital muscular dystrophies versus normal human muscle

Data table header descriptions
VALUE quantile normalized

Data table
4 7.948293485
5 6.526162831
6 6.556134633
7 10.56973974
8 7.760139082
9 6.04532166
10 6.500235705
11 5.977929547
12 9.575004903
13 9.666765428
14 6.955277308
15 7.103994029
16 5.99617651
17 6.610794208
18 6.083274098
19 6.055603512
20 9.190349014
21 8.855767565
22 5.947708214
23 6.028308519

Total number of rows: 62973

Table truncated, full table size 1089 Kbytes.

Supplementary file Size Download File type/resource
GSM1068579_01_MA_1100252800414335_Cy3_98B-821_1_1.txt.gz 12.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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