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Sample GSM1054174 Query DataSets for GSM1054174
Status Public on Dec 19, 2012
Title LPSX1_com_2
Sample type RNA
Source name LPSX1, combo treated
Organism Homo sapiens
Characteristics tissue type: xenograft
cell type: liposarcoma
tumor histology: de-differentiated
host organism: Mus musculus
Extracted molecule total RNA
Extraction protocol Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
Label Cy3
Label protocol Using Agilent LowInput Quick Amp One Color Labeling Kit (Agilent Technologies) and protocol
Hybridization protocol Following Agilent SurePrint Human GE 8x60 microarray protocol
Scan protocol Arrays were scanned with Agilent DNA Microarray Scanner. Numerical results were extracted with Feature Extraction software version 10.7.1 using 028004_D_F_20110708 grid, GE1_107_Sep09 protocol and GE1_QCMT_Sep09 metric set
Description LPSX1 xenograft tumor after combination (rapamycin & sorafenib) treatment, biological replicate 2
Data processing Text files from Agilent Feature Extraction software were processed and normalized by Agi4x44PreProcess package (version 1.14.0) downloaded from Bioconductor. In brief, the signal was adjusted by background correction, and the normalized by quantile method. Probes were fitered out if their signals were abcent (i.e. not above the background) in more than 75% of samples.
Submission date Dec 18, 2012
Last update date Dec 19, 2012
Contact name Linh My Tran
Organization name University of Los Angeles
Department Medicine - Pulmonary & Critical Care
Lab Dubinett Lab
Street address Box 951690, 37-131 CHS
City Los Angeles
State/province California
ZIP/Postal code 90095-1690
Country USA
Platform ID GPL13607
Series (1)
GSE42975 Novel dedifferentiated liposarcoma xenograft models reveal PTEN down regulation as a malignant signature and response to PI3K pathway inhibition

Data table header descriptions
VALUE The output data is in log2-scale

Data table
4 8.68
5 9.968
6 7.179
7 11.301
8 10.614
10 6.987
12 11.786
13 11.458
14 9.141
15 12.54
17 7.803
18 6.74
20 9.109

Total number of rows: 62976

Table truncated, full table size 627 Kbytes.

Supplementary file Size Download File type/resource
GSM1054174_252800415023_201204180926_S01_GE1_107_Sep09_2_1_X1P15_C2.txt.gz 12.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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