|
Status |
Public on Sep 28, 2012 |
Title |
HudsonAlpha_ChipSeq_GM12878_RUNX3_(SC-101553)_v042211.1 |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Mouse monoclonal IgG, raised against amino acids 191-300 of recombinant RUNX3 of human origin. Antibody Target: RUNX3 antibody targetdescription: This gene encodes a member of the runt domain-containing family of transcription factors. A heterodimer of this protein and a beta subunit forms a complex that binds to the core DNA sequence 5'-PYGPYGGT-3' found in a number of enhancers and promoters, and can either activate or suppress transcription. It also interacts with other transcription factors. It functions as a tumor suppressor, and the gene is frequently deleted or transcriptionally silenced in cancer. Multiple transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq) antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-101553 controlid: SL6022 labexpid: SL8128,SL7898 softwareversion: MACS cell sex: F antibody: RUNX3_(SC-101553) antibody antibodydescription: Mouse monoclonal IgG, raised against amino acids 191-300 of recombinant RUNX3 of human origin. Antibody Target: RUNX3 antibody targetdescription: This gene encodes a member of the runt domain-containing family of transcription factors. A heterodimer of this protein and a beta subunit forms a complex that binds to the core DNA sequence 5'-PYGPYGGT-3' found in a number of enhancers and promoters, and can either activate or suppress transcription. It also interacts with other transcription factors. It functions as a tumor suppressor, and the gene is frequently deleted or transcriptionally silenced in cancer. Multiple transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq) antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-101553 treatment: None treatment description: No special treatment or protocol applies protocol: v042211.1 protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers) controlid: SL6022 labexpid: SL8128,SL7898 replicate: 1,2 softwareversion: MACS
|
Biomaterial provider |
Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
|
Treatment protocol |
None
|
Growth protocol |
GM12878_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Submission date |
Sep 28, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (2) |
GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX190349 |
BioSample |
SAMN01731778 |
Named Annotation |
GSM1010893_hg19_wgEncodeHaibTfbsGm12878Runx3sc101553V0422111RawRep1.bigWig |
Named Annotation |
GSM1010893_hg19_wgEncodeHaibTfbsGm12878Runx3sc101553V0422111RawRep2.bigWig |