|
| Status |
Public on Sep 28, 2012 |
| Title |
HudsonAlpha_ChipSeq_A549_SP1_EtOH_0.02pct_v042211.1 |
| Sample type |
SRA |
| |
|
| Source name |
A549
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Sp1(E-3) is a mouse monoclonal antibody raised against amino acids 121-345 mapping near the N-terminus of Sp1 ofhuman origin. Recommended for detection of Sp1 of m, r and h origin by WB, IP, IF and ELISA. Antibody Target: SP1
antibody targetdescription: SP1 is a transcription factor that binds to GC box promoters elements and selectively activates mRNA synthesis from genes that contain functional recognition sites. It can interact with G/C-rich motifs from the serotonin receptor promoter.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-17824
controlid: SL6021
labexpid: SL5360,SL5701
softwareversion: MACS
cell sex: M
antibody: SP1
antibody antibodydescription: Sp1(E-3) is a mouse monoclonal antibody raised against amino acids 121-345 mapping near the N-terminus of Sp1 ofhuman origin. Recommended for detection of Sp1 of m, r and h origin by WB, IP, IF and ELISA. Antibody Target: SP1
antibody targetdescription: SP1 is a transcription factor that binds to GC box promoters elements and selectively activates mRNA synthesis from genes that contain functional recognition sites. It can interact with G/C-rich motifs from the serotonin receptor promoter.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-17824
treatment: EtOH_0.02pct
treatment description: 1 h with 0.02% Ethanol (Myers)
protocol: v042211.1
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
controlid: SL6021
labexpid: SL5360,SL5701
replicate: 1,2
softwareversion: MACS
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
EtOH_0.02pct
|
| Growth protocol |
A549_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Submission date |
Sep 28, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
|
| Relations |
| SRA |
SRX190269 |
| BioSample |
SAMN01731698 |
| Named Annotation |
GSM1010813_hg19_wgEncodeHaibTfbsA549Sp1V0422111Etoh02RawRep1.bigWig |
| Named Annotation |
GSM1010813_hg19_wgEncodeHaibTfbsA549Sp1V0422111Etoh02RawRep2.bigWig |
