|
Status |
Public on Sep 28, 2012 |
Title |
HudsonAlpha_ChipSeq_PANC-1_NRSF_v041610.1 |
Sample type |
SRA |
|
|
Source name |
PANC-1
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Mouse monoclonal. Antibody Target: NRSF antibody targetdescription: Neuron-restrictive silencer transcription factor antibody vendorname: Dr. David Anderson at Caltech antibody vendorid: (Made by Protein Expression Center: pec@caltech.edu) controlid: SL3776 labexpid: SL4437,SL5495 softwareversion: MACS cell sex: M antibody: NRSF antibody antibodydescription: Mouse monoclonal. Antibody Target: NRSF antibody targetdescription: Neuron-restrictive silencer transcription factor antibody vendorname: David Anderson, Caltech antibody vendorid: (Made by Protein Expression Center: pec@caltech.edu) treatment: None treatment description: No special treatment or protocol applies protocol: v041610.1 protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers) controlid: SL3776 labexpid: SL4437,SL5495 replicate: 1,2 softwareversion: MACS
|
Biomaterial provider |
ATCC
|
Treatment protocol |
None
|
Growth protocol |
PANC-1_Myers_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Submission date |
Sep 28, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (1) |
GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
|
Relations |
SRA |
SRX190248 |
BioSample |
SAMN01731677 |
Named Annotation |
GSM1010792_hg19_wgEncodeHaibTfbsPanc1NrsfV0416101RawRep1.bigWig |
Named Annotation |
GSM1010792_hg19_wgEncodeHaibTfbsPanc1NrsfV0416101RawRep2.bigWig |