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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 28, 2012 |
| Title |
HudsonAlpha_ChipSeq_A549_FOXA1_(SC-101058)_EtOH_0.02pct_v041610.2 |
| Sample type |
SRA |
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| Source name |
A549
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| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Mouse monoclonal IgG, raised against recombinant HNF-3a of human origin. Antibody Target: FOXA1
antibody targetdescription: This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-101058
controlid: SL3251,SL2665
labexpid: SL3251,SL2665
cell lineage: endoderm
cell sex: M
antibody: FOXA1_(SC-101058)
antibody antibodydescription: Mouse monoclonal IgG, raised against recombinant HNF-3a of human origin. Antibody Target: FOXA1
antibody targetdescription: This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-101058
treatment: EtOH_0.02pct
treatment description: 1 h with 0.02% Ethanol (Myers)
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL3251,SL2665
labexpid: SL3251,SL2665
replicate: 1,2
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| Biomaterial provider |
ATCC
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| Treatment protocol |
EtOH_0.02pct
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| Growth protocol |
A549_protocol.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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| Submission date |
Sep 28, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
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| Relations |
| SRA |
SRX190181 |
| BioSample |
SAMN01731610 |
| Named Annotation |
GSM1010725_hg19_wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep1.bigWig |
| Named Annotation |
GSM1010725_hg19_wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep2.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1010725_hg19_wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep1.bigWig |
22.5 Mb |
(ftp)(http) |
BIGWIG |
| GSM1010725_hg19_wgEncodeHaibTfbsA549Foxa1V0416102Etoh02RawRep2.bigWig |
24.9 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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