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Sample GSM1003870 Query DataSets for GSM1003870
Status Public on Dec 18, 2012
Title UPN 831711, 3 day Mock treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 57 years
tissue: bone marrow
treatment: mock
aml sample identifier: 831711
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 831711_Mock_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.905092185
cg00000108 0.972036896
cg00000109 0.942638455
cg00000165 0.176742253
cg00000236 0.849050415
cg00000289 0.739698732
cg00000292 0.896281022
cg00000321 0.55700672
cg00000363 0.322787802
cg00000622 0.028930536
cg00000658 0.87228382
cg00000714 0.42049438
cg00000721 0.927944303
cg00000734 0.127365672
cg00000769 0.075686566
cg00000807 0.882771896
cg00000884 0.884779347
cg00000905 0.096808502
cg00000924 0.587337509
cg00000948 0.912131717

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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