|
| Status |
Public on Sep 12, 2012 |
| Title |
Duke_Combined_Gliobla_wgEncodeOpenChromSynth |
| Sample type |
SRA |
| |
|
| Source name |
Gliobla
|
| Organism |
Homo sapiens |
| Characteristics |
lab: Duke
lab description: Crawford - Duke University
datatype: Combined
datatype description: Multi-assay Synthesis
cell: Gliobla
cell organism: human
cell description: glioblastoma, these cells (aka H54 and D54) come from a surgical resection from a patient with glioblastoma multiforme (WHO Grade IV). D54 is a commonly studied glioblastoma cell line (Bao et al., 2006) that has been thoroughly described by S Bigner (1981). (PMID: 7252524)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: U
treatment: None
treatment description: No special treatment or protocol applies
composite: wgEncodeOpenChromSynth
labversion: 1.0
|
| Biomaterial provider |
Duke University Medical Center, requests for D54 cells should be directed to Darrell Bigner
|
| Treatment protocol |
None
|
| Growth protocol |
D54_Crawford_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromSynth
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromSynth
|
| |
|
| Submission date |
Sep 12, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE40833 |
DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA) |
|
| Relations |
| Reanalysis of |
GSM816668 |
| Reanalysis of |
GSM822268 |
| Reanalysis of |
GSM822302 |
| Reanalysis of |
GSM822303 |
| Reanalysis of |
GSM864350 |
| BioSample |
SAMN02197240 |
| Named Annotation |
GSM1002662_hg19_wgEncodeOpenChromSynthGlioblaPk.bed.gz |
| SRA |
SRX100916 |
| SRA |
SRX102971 |
| SRA |
SRX103001 |
| SRA |
SRX103002 |
| SRA |
SRX117794 |
