GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1002654
Query DataSets for GSM1002654
Status
Public on Sep 12, 2012
Title
Duke_Combined_HepG2_wgEncodeOpenChromSynth
Sample type
SRA
Source name
HepG2
Organism
Homo sapiens
Characteristics
lab: Duke
lab description: Crawford - Duke University
datatype: Combined
datatype description: Multi-assay Synthesis
cell: HepG2
cell organism: human
cell description: hepatocellular carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
composite: wgEncodeOpenChromSynth
labversion: 1.0
Biomaterial provider
ATCC
Treatment protocol
None
Growth protocol
HepG2_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromSynth
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromSynth
Submission date
Sep 12, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE40833
DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)
Relations
Reanalysis of
GSM816662
Reanalysis of
GSM822284
Reanalysis of
GSM822287
Reanalysis of
GSM822291
Reanalysis of
GSM822314
Reanalysis of
GSM864354
BioSample
SAMN02197289
Named Annotation
GSM1002654_hg19_wgEncodeOpenChromSynthHepg2Pk.bed.gz
SRA
SRX100912
SRA
SRX102983
SRA
SRX102986
SRA
SRX102990
SRA
SRX103013
SRA
SRX117798
Supplementary file
Size
Download
File type/resource
GSM1002654_hg19_wgEncodeOpenChromSynthHepg2Pk.bed.gz
6.3 Mb
(ftp)
(http)
BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
