GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1002654 Query DataSets for GSM1002654
Status Public on Sep 12, 2012
Title Duke_Combined_HepG2_wgEncodeOpenChromSynth
Sample type SRA
Source name HepG2
Organism Homo sapiens
Characteristics lab: Duke
lab description: Crawford - Duke University
datatype: Combined
datatype description: Multi-assay Synthesis
cell: HepG2
cell organism: human
cell description: hepatocellular carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
composite: wgEncodeOpenChromSynth
labversion: 1.0
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 12, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE40833 DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)
Reanalysis of GSM816662
Reanalysis of GSM822284
Reanalysis of GSM822287
Reanalysis of GSM822291
Reanalysis of GSM822314
Reanalysis of GSM864354
BioSample SAMN02197289
Named Annotation GSM1002654_hg19_wgEncodeOpenChromSynthHepg2Pk.bed.gz
SRA SRX100912
SRA SRX102983
SRA SRX102986
SRA SRX102990
SRA SRX103013
SRA SRX117798

Supplementary file Size Download File type/resource
GSM1002654_hg19_wgEncodeOpenChromSynthHepg2Pk.bed.gz 6.3 Mb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap