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GEO accession:
Series GSE85246
Query DataSets for GSE85246
Status
Public on Nov 18, 2016
Title
Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27863248
Submission date
Aug 05, 2016
Last update date
May 15, 2019
Contact name
Hendrik G Stunnenberg
E-mail(s)
H.Stunnenberg@ncmls.ru.nl
Phone
+31 (0)24 3610524
Organization name
Radboud University
Department
Molecular Biology
Street address
Geert Grooteplein 28
City
Nijmegen
ZIP/Postal code
6525 GA
Country
Netherlands
Platforms (2)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (239)
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More...
GSM2262836
BG_1h_6087
GSM2262837
BG_1h_6711
GSM2262838
BG_4h_6090
GSM2262839
BG_4h_6714
GSM2262840
BG_4h_don73_10836
GSM2262841
BG_d1_6093
GSM2262842
BG_d1_6717
GSM2262843
BG_d6_6096
GSM2262844
BG_d6_6720
GSM2262845
BG_d6_8748
GSM2262846
BG_d6_8753
GSM2262847
BG_d6_9245
GSM2262848
BG_d6_Restim_8751
GSM2262849
BG_d6_Restim_8755
GSM2262850
BG_d6_Restim_9248
GSM2262851
IBET_4h_RPMI_don73_10837
GSM2262852
IBET_d6_BG_0uM_9882
GSM2262853
IBET_d6_BG_1uM_9883
GSM2262854
IBET_d6_BG_5uM_9884
GSM2262855
IBET_d6_LPS_0uM_10529
GSM2262856
IBET_d6_LPS_0uM_9879
GSM2262857
IBET_d6_LPS_0uM_Restim_10531
GSM2262858
IBET_d6_LPS_1uM_9880
GSM2262859
IBET_d6_LPS_5uM_10530
GSM2262860
IBET_d6_LPS_5uM_10643
GSM2262861
IBET_d6_LPS_5uM_10651
GSM2262862
IBET_d6_LPS_5uM_9881
GSM2262863
IBET_d6_LPS_5uM_Restim_10532
GSM2262864
IBET_d6_LPS_5uM_Restim_10644
GSM2262865
IBET_d6_LPS_5uM_Restim_10652
GSM2262866
IBET_d6_RPMI_0uM_10525
GSM2262867
IBET_d6_RPMI_0uM_9876
GSM2262868
IBET_d6_RPMI_0uM_Restim_10527
GSM2262869
IBET_d6_RPMI_1uM_9877
GSM2262870
IBET_d6_RPMI_5uM_10526
GSM2262871
IBET_d6_RPMI_5uM_9878
GSM2262872
IBET_d6_RPMI_5uM_Restim_10528
GSM2262873
LPS_1h_6088
GSM2262874
LPS_1h_6710
GSM2262875
LPS_4h_6091
GSM2262876
LPS_4h_6713
GSM2262877
LPS_4h_don73_10835
GSM2262878
LPS_d1_6094
GSM2262879
LPS_d1_6716
GSM2262880
LPS_d6_6097
GSM2262881
LPS_d6_6719
GSM2262882
LPS_d6_8747
GSM2262883
LPS_d6_9244
GSM2262884
LPS_d6_Restim_8750
GSM2262885
LPS_d6_Restim_9247
GSM2262886
LPS_d6_don70_10649
GSM2262887
LPS_d6_Restim_don70_10650
GSM2262888
LPSthenIBET_d6_don70_10831
GSM2262889
LPSthenIBET_d6_Restim_don70_10832
GSM2262890
Monocyte_d0_6085
GSM2262891
Monocyte_d0_6708
GSM2262892
Monocyte_d0_IBET_9885
GSM2262893
Monocyte_d0_don73_10833
GSM2262894
RPMI_1h_6086
GSM2262895
RPMI_1h_6709
GSM2262896
RPMI_4h_6089
GSM2262897
RPMI_4h_6712
GSM2262898
RPMI_4h_don73_10834
GSM2262899
RPMI_d1_6092
GSM2262900
RPMI_d1_6715
GSM2262901
RPMI_d6_6095
GSM2262902
RPMI_d6_6718
GSM2262903
RPMI_d6_8746
GSM2262904
RPMI_d6_8752
GSM2262905
RPMI_d6_9243
GSM2262906
RPMI_d6_Restim_8749
GSM2262907
RPMI_d6_Restim_8754
GSM2262908
RPMI_d6_Restim_9246
GSM2262909
RPMI_d6_don70_10647
GSM2262910
RPMI_d6_Restim_don70_10648
GSM2262911
Rescue_LPS_BGd2_Restim_10646
GSM2262912
Rescue_LPS_BGd2_Restim_10654
GSM2262913
Rescue_LPS_BGd2_d6_10645
GSM2262914
Rescue_LPS_BGd2_d6_10653
GSM2262923
LPS_1h_rep1_H3K27ac
GSM2262924
BG_1h_rep1_H3K4me1
GSM2262925
BG_d7_rep1_H3K4me3
GSM2262926
RPMI_1h_rep1_H3K4me3
GSM2262927
BG_4h_rep1_H3K4me3
GSM2262928
don73_LPS_d6_H3K4me1
GSM2262929
don74_LPS_d6_co_iBET_H3K27ac
GSM2262930
BG_R_rep1_H3K27me3
GSM2262931
LPS_d1_H3K27me3
GSM2262932
BG_d6_rep1_H3K27ac
GSM2262933
LPS_d1_rep1_H3K27ac
GSM2262934
LPS_d1_rep1_H3K4me3
GSM2262935
LPS_d1_rep2_H3K27ac
GSM2262936
d0_rep2_H3K4me3
GSM2262937
BG_d1_rep2_H3K27ac
GSM2262938
BG_4h_rep1_H3K27ac
GSM2262939
LPS_R_rep1_H3K27me3
GSM2262940
RPMI_d6_rep1_H3K4me3
GSM2262941
LPS_1h_rep1_H3K4me1
GSM2262942
RPMI_R_H3K9me3
GSM2262943
RPMI_1h_rep1_H3K4me1
GSM2262944
BG_4h_rep2_H3K27ac
GSM2262945
LPS_d7_rep1_H3K27ac
GSM2262946
don74_LPS_d6_co_iBET_H3K4me1
GSM2262947
RPMI_d7_rep1_H3K4me3
GSM2262948
RPMI_4h_rep1_H3K4me1
GSM2262949
don73_RPMI_d6_H3K27ac
GSM2262950
LPS_d1_rep1_H3K4me1
GSM2262951
RPMI_1h_rep2_H3K4me3
GSM2262952
BG_1h_rep2_H3K4me3
GSM2262953
LPS_d6_rep2_H3K4me1
GSM2262954
don73_RPMI_d6_H3K4me1
GSM2262955
BG_1h_rep1_H3K4me3
GSM2262956
LPS_d6_rep1_H3K27ac
GSM2262957
BG_d6_H3K9me3
GSM2262958
LPS_R_rep2_H3K27me3
GSM2262959
don74_RPMI_d6_H3K4me1
GSM2262960
RPMI_d6_rep1_H3K27me3
GSM2262961
BG_d6_rep2_H3K4me1
GSM2262962
LPS_4h_rep2_H3K4me3
GSM2262963
RPMI_d6_rep2_H3K27ac
GSM2262964
LPS_d6_rep2_H3K27me3
GSM2262965
d0_rep1_H3K4me3
GSM2262966
BG_1h_rep2_H3K27ac
GSM2262967
LPS_4h_H3K9me3
GSM2262968
RPMI_d6_rep2_H3K27me3
GSM2262969
don74_LPS_d6_24hr_BG_H3K27ac
GSM2262970
RPMI_d1_rep1_H3K27ac
GSM2262971
BG_4h_rep2_H3K4me3
GSM2262972
don74_LPS_d6_H3K4me1
GSM2262973
RPMI_d1_rep2_H3K4me3
GSM2262974
LPS_d1_H3K9me3
GSM2262975
BG_d1_H3K27me3
GSM2262976
RPMI_4h_rep1_H3K4me3
GSM2262977
RPMI_4h_rep2_H3K27ac
GSM2262978
RPMI_d1_H3K27me3
GSM2262979
RPMI_d7_rep1_H3K4me1
GSM2262980
BG_d6_rep1_H3K4me3
GSM2262981
don73_LPS_d6_H3K27ac
GSM2262982
LPS_d7_rep1_H3K4me1
GSM2262983
don74_LPS_d6_24hr_BG_H3K4me1
GSM2262984
RPMI_1h_rep2_H3K4me1
GSM2262985
don74_LPS_d6_H3K27ac
GSM2262986
LPS_R_H3K9me3
GSM2262987
LPS_1h_rep1_H3K4me3
GSM2262988
BG_d1_rep1_H3K27ac
GSM2262989
RPMI_4h_H3K27me3
GSM2262990
RPMI_d1_rep2_H3K27ac
GSM2262991
BG_d1_rep1_H3K4me1
GSM2262992
RPMI_d7_rep1_H3K27ac
GSM2262993
d0_H3K27me3
GSM2262994
BG_d1_rep2_H3K4me1
GSM2262995
BG_R_rep2_H3K27me3
GSM2262996
LPS_d6_rep1_H3K4me1
GSM2262997
LPS_d7_rep1_H3K4me3
GSM2262998
RPMI_4h_rep2_H3K4me3
GSM2262999
LPS_4h_rep2_H3K27ac
GSM2263000
BG_d6_rep2_H3K27me3
GSM2263001
d0_rep2_H3K27ac
GSM2263002
d0_rep2_H3K4me1
GSM2263003
RPMI_d1_rep1_H3K4me1
GSM2263004
RPMI_R_rep2_H3K27me3
GSM2263005
LPS_d6_rep1_H3K27me3
GSM2263006
d0_rep1_H3K4me1
GSM2263007
RPMI_d6_rep2_H3K4me1
GSM2263008
BG_d7_rep1_H3K4me1
GSM2263009
BG_d7_rep1_H3K27ac
GSM2263010
BG_1h_rep1_H3K27ac
GSM2263011
LPS_4h_rep1_H3K27ac
GSM2263012
RPMI_4h_H3K9me3
GSM2263013
BG_4h_rep2_H3K4me1
GSM2263014
LPS_4h_H3K27me3
GSM2263015
RPMI_d6_rep2_H3K4me3
GSM2263016
RPMI_d1_rep1_H3K4me3
GSM2263017
BG_4h_H3K27me3
GSM2263018
LPS_1h_rep2_H3K27ac
GSM2263019
RPMI_4h_rep1_H3K27ac
GSM2263020
LPS_d1_rep2_H3K4me1
GSM2263021
LPS_1h_rep2_H3K4me1
GSM2263022
RPMI_d1_H3K9me3
GSM2263023
RPMI_4h_rep2_H3K4me1
GSM2263024
Mo_d0_H3K9me3
GSM2263025
RPMI_d1_rep2_H3K4me1
GSM2263026
RPMI_1h_rep1_H3K27ac
GSM2263027
RPMI_d6_rep1_H3K27ac
GSM2263028
BG_4h_H3K9me3
GSM2263029
BG_1h_rep2_H3K4me1
GSM2263030
BG_d6_rep1_H3K4me1
GSM2263031
LPS_d6_rep1_H3K4me3
GSM2263032
don74_RPMI_d6_H3K27ac
GSM2263033
RPMI_d6_rep1_H3K4me1
GSM2263034
BG_d6_rep2_H3K27ac
GSM2263035
don73_LPS_d6_24hr_BG_H3K27ac
GSM2263036
d0_rep1_H3K27ac
GSM2263037
BG_d6_rep1_H3K27me3
GSM2263038
LPS_4h_rep1_H3K4me3
GSM2263039
BG_d1_rep2_H3K4me3
GSM2263040
BG_d1_H3K9me3
GSM2263041
LPS_d6_H3K9me3
GSM2263042
RPMI_d6_H3K9me3
GSM2263043
BG_d1_rep1_H3K4me3
GSM2263044
RPMI_1h_rep2_H3K27ac
GSM2263045
BG_4h_rep1_H3K4me1
GSM2263046
LPS_d6_rep2_H3K4me3
GSM2263047
BG_R_H3K9me3
GSM2263048
LPS_1h_rep2_H3K4me3
GSM2263049
LPS_4h_rep1_H3K4me1
GSM2263050
don73_LPS_d6_24hr_BG_H3K4me1
GSM2263051
LPS_d1_rep2_H3K4me3
GSM2263052
LPS_4h_rep2_H3K4me1
GSM2263053
LPS_d6_rep2_H3K27ac
GSM2263054
BG_d6_rep2_H3K4me3
GSM2325664
D3_BG_don73_10841
GSM2325665
D3_BG_restim_don73_10848
GSM2325666
D3_LPS_don73_10840
GSM2325667
D3_LPS_restim_don73_10847
GSM2325668
D3_RPMI_don73_10839
GSM2325669
D3_RPMI_restim_don73_10846
GSM2325670
D3_Rescue_LPS_BGd2_don73_10845
GSM2325671
D3_Rescue_LPS_BGd2_restim_don73_10852
GSM2325672
D3_Rescue_RPMI_BGd2_don73_10844
GSM2325673
D3_Rescue_RPMI_BGd2_restim_don73_10851
GSM2325674
D3_coIBET_LPS_don73_10843
GSM2325675
D3_coIBET_LPS_restim_don73_10850
GSM2325676
D3_coIBET_RPMI_don73_10842
GSM2325677
D3_coIBET_RPMI_restim_don73_10849
GSM2325678
IBET_4h_LPS_don73_10838
GSM2325679
ATAC_BG_1h_8447
GSM2325680
ATAC_BG_4h_8450
GSM2325681
ATAC_BG_d1_8453
GSM2325682
ATAC_BG_d6_8456
GSM2325683
ATAC_LPS_1h_8446
GSM2325684
ATAC_LPS_4h_8449
GSM2325685
ATAC_LPS_d1_8452
GSM2325686
ATAC_LPS_d6_8455
GSM2325687
ATAC_Mono_8444
GSM2325688
ATAC_RPMI_1h_8445
GSM2325689
ATAC_RPMI_4h_8448
GSM2325690
ATAC_RPMI_d1_8451
GSM2325691
ATAC_RPMI_d6_8454
This SuperSeries is composed of the following SubSeries:
GSE85243
Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory (RNA-Seq)
GSE85245
Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory (ChIP-Seq)
GSE87218
Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory (ATAC-Seq)
Relations
BioProject
PRJNA343082
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE85246_RAW.tar
27.7 Gb
(http)
(custom)
TAR (of BW, TXT)
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