GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE84520
Query DataSets for GSE84520
Status
Public on Mar 02, 2017
Title
Opposing macrophage-polarization programs show extensive epigenomic and transcriptional cross-talk
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28288101
Submission date
Jul 18, 2016
Last update date
May 15, 2019
Contact name
Viviana Piccolo
E-mail(s)
viviana.piccolo@ieo.it
Organization name
European Institute of Oncology (IEO)
Department
Department of Experimental Oncology
Lab
Gioacchino Natoli Lab
Street address
Via Adamello 16
City
Milano
State/province
Milano
ZIP/Postal code
20139
Country
Italy
Platforms (2)
GPL9250
Illumina Genome Analyzer II (Mus musculus)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
Samples (80)
Less...
More...
GSM2241166
poly(A) mRNA UT_R1
GSM2241167
poly(A) mRNA IL4_2h_R1
GSM2241168
poly(A) mRNA IFNg_2h_R1
GSM2241169
poly(A) mRNA IFNg_IL4_2h_R1
GSM2241170
poly(A) mRNA IL4_4h_R1
GSM2241171
poly(A) mRNA IFNg_4h_R1
GSM2241172
poly(A) mRNA IFNg_IL4_4h_R1
GSM2241173
poly(A) mRNA UT_R2
GSM2241174
poly(A) mRNA IL4_2h_R2
GSM2241175
poly(A) mRNA IFNg_2h_R2
GSM2241176
poly(A) mRNA IFNg_IL4_2h_R2
GSM2241177
poly(A) mRNA IL4_4h_R2
GSM2241178
poly(A) mRNA IFNg_4h_R2
GSM2241179
poly(A) mRNA IFNg_IL4_4h_R2
GSM2241180
poly(A) mRNA UT_R3
GSM2241181
poly(A) mRNA IL4_2h_R3
GSM2241182
poly(A) mRNA IFNg_2h_R3
GSM2241183
poly(A) mRNA IFNg_IL4_2h_R3
GSM2241184
poly(A) mRNA IL4_4h_R3
GSM2241185
poly(A) mRNA IFNg_4h_R3
GSM2241186
poly(A) mRNA IFNg_IL4_4h_R3
GSM2241193
ChIP-Seq input
GSM2241194
ChIP-Seq STAT1_IFNg_2h
GSM2241195
ChIP-Seq STAT1_IFNg_IL4_2h
GSM2241196
ChIP-Seq STAT6_IL4_2h
GSM2241197
ChIP-Seq STAT6_IL4_IFNg_2h
GSM2241203
ChIP-Seq H3K27ac_UT
GSM2241204
ChIP-Seq H3K27ac_IL4_2h
GSM2241205
ChIP-Seq H3K27ac_IFNg_2h
GSM2241206
ChIP-Seq H3K27ac_IFNg_IL4_2h
GSM2241207
ChIP-Seq H3K27ac_IL4_4h
GSM2241208
ChIP-Seq H3K27ac_IFNg_4h
GSM2241209
ChIP-Seq H3K27ac_IFNg_IL4_4h
GSM2425201
RNA-Seq_scramble_UT_R1
GSM2425202
RNA-Seq_shJunB_UT_R1
GSM2425203
RNA-Seq_shCEBP-beta_UT_R1
GSM2425204
RNA-Seq_scramble_IFNg_4h_R1
GSM2425205
RNA-Seq_shJunB_IFNg_4h_R1
GSM2425206
RNA-Seq_shCEBP-beta_IFNg_4h_R1
GSM2425207
RNA-Seq_scramble_UT_R2
GSM2425208
RNA-Seq_shJunB_UT_R2
GSM2425209
RNA-Seq_shCEBP-beta_UT_R2
GSM2425210
RNA-Seq_scramble_IFNg_4h_R2
GSM2425211
RNA-Seq_shJunB_IFNg_4h_R2
GSM2425212
RNA-Seq_shCEBP-beta_IFNg_4h_R2
GSM2425213
RNA-Seq__scramble_UT_R1
GSM2425214
RNA-Seq__shMyc_UT_R1
GSM2425215
RNA-Seq__scramble_IL-4_2h_R1
GSM2425216
RNA-Seq__shMyc_IL-4_2h_R1
GSM2425217
RNA-Seq__scramble_IL-4_4h_R1
GSM2425218
RNA-Seq__shMyc_IL-4_4h_R1
GSM2425219
RNA-Seq__scramble_UT_R2
GSM2425220
RNA-Seq__shMyc_UT_R2
GSM2425221
RNA-Seq__scramble_IL-4_2h_R2
GSM2425222
RNA-Seq__shMyc_IL-4_2h_R2
GSM2425223
RNA-Seq__scramble_IL-4_4h_R2
GSM2425224
RNA-Seq__shMyc_IL-4_4h_R2
GSM2425225
ChIP_wt_STAT1_UT
GSM2425226
ChIP_wt_STAT1_IFNg_2h
GSM2425227
ChIP_wt_STAT1_IFNg_4h
GSM2425228
ChIP_wt_IRF1_UT
GSM2425229
ChIP_wt_IRF1_IFNg_4h
GSM2425230
ChIP_wt_IRF1_IFNg_IL4_4h
GSM2425231
ChIP_wt_JunB_UT
GSM2425232
ChIP_wt_JunB_IFNg_4h
GSM2425233
ChIP_wt_JunB_IFNg_IL4_4h
GSM2425234
ChIP_wt_C/EBP-beta_UT
GSM2425235
ChIP_wt_C/EBP-beta_IFNg_4h
GSM2425236
ChIP_wt_C/EBP-beta_IFNg_IL4_4h
GSM2425237
ChIP_wt_MYC_UT
GSM2425238
ChIP_wt_MYC_IL4_2h
GSM2425239
ChIP_wt_MYC_IL4_4h
GSM2425240
ChIP_wt_MYC_IL4_IFNg_2h
GSM2425241
ChIP_wt_MYC_IL4_IFNg_4h
GSM2425242
ChIP_H3K27ac_scramble_UT
GSM2425243
ChIP_H3K27ac_scramble_IFNg_4h
GSM2425244
ChIP_H3K27ac_shJunB_UT
GSM2425245
ChIP_H3K27ac_shJunB_IFNg_4h
GSM2425246
ChIP_H3K27ac_shCEBP-beta_UT
GSM2425247
ChIP_H3K27ac_shCEBP-beta_IFNg_4h
This SuperSeries is composed of the following SubSeries:
GSE84517
Opposing macrophage-polarization programs show extensive epigenomic and transcriptional cross-talk [RNA-Seq]
GSE84518
Opposing macrophage-polarization programs show extensive epigenomic and transcriptional cross-talk [ChIP_narrow]
GSE84519
Opposing macrophage-polarization programs show extensive epigenomic and transcriptional cross-talk [ChIP_broadly]
Relations
BioProject
PRJNA329530
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE84520_RAW.tar
17.3 Mb
(http)
(custom)
TAR (of BED, NARROWPEAK, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|