|
| Status |
Public on Apr 24, 2017 |
| Title |
Transgenerational transmission of environmental information in C. elegans |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA sequencing of N2 worms. Heterochromatic repetitive DNA transmits environmentally-acquired information for up-to fourteen generations in C. elegans
|
| |
|
| Overall design |
RNA sequencing of N2 worms grown at 25 degrees, worms propagated for 3 generations at 20 degrees after temperature shift from 25 degrees, and worms grown at a reference temperature of 20 degrees. This series includes RNA sequencing of set25 mutant worms grown at a reference temperature of 20 degrees.
|
| |
|
| Contributor(s) |
Klosin A, Casas E, Hidalgo C, Vavouri T, Lehner B |
| Citation(s) |
28428426 |
| |
| Submission date |
Jun 20, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Eduard Casas |
| E-mail(s) |
eduard.casasmasnou@colorado.edu
|
| Organization name |
CU Boulder
|
| Department |
MCDB
|
| Lab |
Brumbaugh Lab
|
| Street address |
Porter Biosciences, CU Campus
|
| City |
Boulder |
| State/province |
Colorado |
| ZIP/Postal code |
80302 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13657 |
Illumina HiSeq 2000 (Caenorhabditis elegans) |
|
| Samples (12)
|
| GSM2208068 |
RNA sequencing of High Worms biological replicate 1 |
| GSM2208069 |
RNA sequencing of High Worms biological replicate 2 |
| GSM2208070 |
RNA sequencing of High Worms biological replicate 3 |
| GSM2208071 |
RNA sequencing of High Worms F3 biological replicate 1 |
| GSM2208072 |
RNA sequencing of High Worms F3 biological replicate 2 |
| GSM2208073 |
RNA sequencing of High Worms F3 biological replicate 3 |
| GSM2208074 |
RNA sequencing of Low Worms biological replicate 1 |
| GSM2208075 |
RNA sequencing of Low Worms biological replicate 2 |
| GSM2208076 |
RNA sequencing of Low Worms biological replicate 3 |
| GSM2411272 |
RNA sequencing of set25 mutant worms biological replicate 1 |
| GSM2411273 |
RNA sequencing of set25 mutant worms biological replicate 2 |
| GSM2411274 |
RNA sequencing of set25 mutant worms biological replicate 3 |
|
| Relations |
| BioProject |
PRJNA326257 |
| SRA |
SRP076810 |
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